IL_6GSM_075

3D structure

PDB id

6GSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.15 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSM_075 not in the Motif Atlas

Geometric match to IL_4KNQ_002

Geometric discrepancy: 0.1582

The information below is about IL_4KNQ_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

6GSM|1|2|G|1640
6GSM|1|2|U|1641
6GSM|1|2|C|1642
*
6GSM|1|2|G|1755
6GSM|1|2|U|1756
6GSM|1|2|C|1757

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain h

eL41

Chain i

Eukaryotic translation initiation factor 1A

Chain m

Eukaryotic translation initiation factor eIF-1