IL_6GSM_097
3D structure
- PDB id
- 6GSM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in open conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.15 Å
Loop
- Sequence
- UUGCUG*CGGUUGA
- Length
- 13 nucleotides
- Bulged bases
- 6GSM|1|2|U|1369
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GSM_097 not in the Motif Atlas
- Geometric match to IL_5TBW_476
- Geometric discrepancy: 0.3977
- The information below is about IL_5TBW_476
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31007.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
6GSM|1|2|U|1351
6GSM|1|2|U|1352
6GSM|1|2|G|1353
6GSM|1|2|C|1354
6GSM|1|2|U|1355
6GSM|1|2|G|1356
*
6GSM|1|2|C|1365
6GSM|1|2|G|1366
6GSM|1|2|G|1367
6GSM|1|2|U|1368
6GSM|1|2|U|1369
6GSM|1|2|G|1370
6GSM|1|2|A|1371
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain F
- KLLA0D10659p
- Chain Q
- 40S ribosomal protein S16
- Chain T
- KLLA0A07194p
- Chain U
- KLLA0F25542p
Coloring options: