IL_6GSM_108
3D structure
- PDB id
- 6GSM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in open conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.15 Å
Loop
- Sequence
- GGU*GAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GSM_108 not in the Motif Atlas
- Geometric match to IL_8P9A_296
- Geometric discrepancy: 0.2288
- The information below is about IL_8P9A_296
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.5
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 238
Unit IDs
6GSM|1|2|G|870
6GSM|1|2|G|871
6GSM|1|2|U|872
*
6GSM|1|2|G|953
6GSM|1|2|A|954
6GSM|1|2|C|955
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain B
- 40S ribosomal protein S1
- Chain N
- KLLA0F18040p
- Chain b
- 40S ribosomal protein S27
- Chain q
- Eukaryotic translation initiation factor 3 subunit C
Coloring options: