IL_6GSM_111

3D structure

PDB id

6GSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in open conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.15 Å

Loop

Sequence

CUUG*CUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSM_111 not in the Motif Atlas

Homologous match to IL_8P9A_450

Geometric discrepancy: 0.4882

The information below is about IL_8P9A_450

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_76776.3

Basepair signature

cWW-L-R-cWW-cWW

Number of instances in this motif group

6

Unit IDs

6GSM|1|2|C|1493
6GSM|1|2|U|1494
6GSM|1|2|U|1495
6GSM|1|2|G|1496
*
6GSM|1|2|C|1507
6GSM|1|2|U|1508
6GSM|1|2|G|1509
6GSM|1|2|G|1510

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain T

KLLA0A07194p