IL_6GSN_003

3D structure

PDB id

6GSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.75 Å

Loop

Sequence

UCAAA*UGACAA

Length

11 nucleotides

Bulged bases

6GSN|1|2|A|467

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSN_003 not in the Motif Atlas

Geometric match to IL_8C3A_394

Geometric discrepancy: 0.245

The information below is about IL_8C3A_394

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_30569.1

Basepair signature

cWW-cWW-L-R-tHS-cWW

Number of instances in this motif group

2

Unit IDs

6GSN|1|2|U|37
6GSN|1|2|C|38
6GSN|1|2|A|39
6GSN|1|2|A|40
6GSN|1|2|A|41
*
6GSN|1|2|U|465
6GSN|1|2|G|466
6GSN|1|2|A|467
6GSN|1|2|C|468
6GSN|1|2|A|469
6GSN|1|2|A|470

Current chains

Chain 2

18S rRNA (1798-MER)

Nearby chains

Chain E

40S ribosomal protein S4

Chain J

KLLA0E23673p

Chain Y

40S ribosomal protein S24