IL_8C3A_394

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UCAAA*UGACAA

Length

11 nucleotides

Bulged bases

8C3A|1|CM|A|466

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_30569.1

Basepair signature

cWW-cWW-L-R-tHS-cWW

Number of instances in this motif group

2

Unit IDs

8C3A|1|CM|U|37
8C3A|1|CM|C|38
8C3A|1|CM|A|39
8C3A|1|CM|A|40
8C3A|1|CM|A|41
*
8C3A|1|CM|U|464
8C3A|1|CM|G|465
8C3A|1|CM|A|466
8C3A|1|CM|C|467
8C3A|1|CM|A|468
8C3A|1|CM|A|469

Current chains

Chain CM

18S

Nearby chains

Chain CR

40S ribosomal protein S4

Chain CW

Ribosomal protein S4

Chain DL

40S ribosomal protein S24