IL_6GSN_015

3D structure

PDB id

6GSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.75 Å

Loop

Sequence

GGAUAUC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6GSN|1|2|U|169

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSN_015 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.1624

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

6GSN|1|2|G|142
6GSN|1|2|G|143
6GSN|1|2|A|144
6GSN|1|2|U|145
6GSN|1|2|A|146
6GSN|1|2|U|147
6GSN|1|2|C|148
*
6GSN|1|2|G|164
6GSN|1|2|C|165
6GSN|1|2|U|166
6GSN|1|2|A|167
6GSN|1|2|A|168
6GSN|1|2|U|169
6GSN|1|2|A|170
6GSN|1|2|C|171

Current chains

Chain 2

18S rRNA (1798-MER)

Nearby chains

Chain G

40S ribosomal protein S6

Chain Y

40S ribosomal protein S24