IL_6GSN_017

3D structure

PDB id

6GSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.75 Å

Loop

Sequence

CGAC*GAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSN_017 not in the Motif Atlas

Homologous match to IL_4V88_396

Geometric discrepancy: 0.3565

The information below is about IL_4V88_396

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

6GSN|1|2|C|185
6GSN|1|2|G|186
6GSN|1|2|A|187
6GSN|1|2|C|188
*
6GSN|1|2|G|195
6GSN|1|2|A|196
6GSN|1|2|A|197
6GSN|1|2|G|198

Current chains

Chain 2

18S rRNA (1798-MER)

Nearby chains

Chain I

40S ribosomal protein S8