IL_6GSN_025

3D structure

PDB id

6GSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.75 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

6GSN|1|2|U|379

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSN_025 not in the Motif Atlas

Homologous match to IL_4V88_404

Geometric discrepancy: 0.1264

The information below is about IL_4V88_404

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_11347.3

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6GSN|1|2|G|362
6GSN|1|2|G|363
6GSN|1|2|G|364
*
6GSN|1|2|C|375
6GSN|1|2|G|376
6GSN|1|2|A|377
6GSN|1|2|U|378
6GSN|1|2|U|379
6GSN|1|2|C|380

Current chains

Chain 2

18S rRNA (1798-MER)

Nearby chains

Chain E

40S ribosomal protein S4

Chain J

KLLA0E23673p

Chain X

RPS23