IL_6GSN_048
3D structure
- PDB id
- 6GSN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in closed conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.75 Å
Loop
- Sequence
- UUGUCAG*CUUGGAUUUA
- Length
- 17 nucleotides
- Bulged bases
- 6GSN|1|2|G|912
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GSN_048 not in the Motif Atlas
- Homologous match to IL_8P9A_422
- Geometric discrepancy: 0.2742
- The information below is about IL_8P9A_422
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_57741.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
6GSN|1|2|U|892
6GSN|1|2|U|893
6GSN|1|2|G|894
6GSN|1|2|U|895
6GSN|1|2|C|896
6GSN|1|2|A|897
6GSN|1|2|G|898
*
6GSN|1|2|C|909
6GSN|1|2|U|910
6GSN|1|2|U|911
6GSN|1|2|G|912
6GSN|1|2|G|913
6GSN|1|2|A|914
6GSN|1|2|U|915
6GSN|1|2|U|916
6GSN|1|2|U|917
6GSN|1|2|A|918
Current chains
- Chain 2
- 18S rRNA (1798-MER)
Nearby chains
- Chain B
- 40S ribosomal protein S1
- Chain O
- 40S ribosomal protein S14
- Chain j
- Eukaryotic translation initiation factor 2 subunit alpha
- Chain p
- Eukaryotic translation initiation factor 3 subunit B
Coloring options: