3D structure

PDB id
6GSN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a partial yeast 48S preinitiation complex in closed conformation
Experimental method
ELECTRON MICROSCOPY
Resolution
5.75 Å

Loop

Sequence
CGA*UCUUUGG
Length
10 nucleotides
Bulged bases
6GSN|1|2|C|1095, 6GSN|1|2|U|1097, 6GSN|1|2|G|1099
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6GSN_049 not in the Motif Atlas
Homologous match to IL_4V88_437
Geometric discrepancy: 0.2326
The information below is about IL_4V88_437
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_62898.1
Basepair signature
cWW-L-R-L-cWW
Number of instances in this motif group
2

Unit IDs

6GSN|1|2|C|1033
6GSN|1|2|G|1034
6GSN|1|2|A|1035
*
6GSN|1|2|U|1094
6GSN|1|2|C|1095
6GSN|1|2|U|1096
6GSN|1|2|U|1097
6GSN|1|2|U|1098
6GSN|1|2|G|1099
6GSN|1|2|G|1100

Current chains

Chain 2
18S rRNA (1798-MER)

Nearby chains

Chain C
KLLA0F09812p
Chain L
KLLA0A10483p
Chain N
KLLA0F18040p
Chain W
40S ribosomal protein S22
Chain X
RPS23
Chain b
40S ribosomal protein S27

Coloring options:


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