IL_6GSN_053

3D structure

PDB id

6GSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.75 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSN_053 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.2017

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

6GSN|1|2|G|1110
6GSN|1|2|G|1111
6GSN|1|2|A|1112
6GSN|1|2|G|1113
6GSN|1|2|U|1114
6GSN|1|2|A|1115
6GSN|1|2|U|1116
6GSN|1|2|G|1117
*
6GSN|1|2|U|1128
6GSN|1|2|G|1129
6GSN|1|2|A|1130
6GSN|1|2|A|1131
6GSN|1|2|A|1132
6GSN|1|2|C|1133

Current chains

Chain 2

18S rRNA (1798-MER)

Nearby chains

Chain X

RPS23

Chain h

60S ribosomal protein L41-A