IL_6GSN_061

3D structure

PDB id

6GSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.75 Å

Loop

Sequence

CAC*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSN_061 not in the Motif Atlas

Geometric match to IL_5W1H_001

Geometric discrepancy: 0.3293

The information below is about IL_5W1H_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

6GSN|1|2|C|1206
6GSN|1|2|A|1207
6GSN|1|2|C|1208
*
6GSN|1|2|G|1452
6GSN|1|2|G|1453

Current chains

Chain 2

18S rRNA (1798-MER)

Nearby chains

Chain P

KLLA0F07843p

Chain d

40S ribosomal protein S29

Chain f

Ubiquitin-40S ribosomal protein S27a

Chain i

Eukaryotic translation initiation factor 1A