IL_6GSN_073

3D structure

PDB id

6GSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.75 Å

Loop

Sequence

UGC*GUUG

Length

7 nucleotides

Bulged bases

6GSN|1|2|U|1369

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSN_073 not in the Motif Atlas

Geometric match to IL_3KTW_002

Geometric discrepancy: 0.2611

The information below is about IL_3KTW_002

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_43275.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

6GSN|1|2|U|1352
6GSN|1|2|G|1353
6GSN|1|2|C|1354
*
6GSN|1|2|G|1367
6GSN|1|2|U|1368
6GSN|1|2|U|1369
6GSN|1|2|G|1370

Current chains

Chain 2

18S rRNA (1798-MER)

Nearby chains

Chain Q

40S ribosomal protein S16

Chain T

KLLA0A07194p

Chain U

KLLA0F25542p