IL_6GSN_077

3D structure

PDB id

6GSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.75 Å

Loop

Sequence

CUUG*CUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSN_077 not in the Motif Atlas

Homologous match to IL_4V88_461

Geometric discrepancy: 0.3094

The information below is about IL_4V88_461

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

6GSN|1|2|C|1493
6GSN|1|2|U|1494
6GSN|1|2|U|1495
6GSN|1|2|G|1496
*
6GSN|1|2|C|1507
6GSN|1|2|U|1508
6GSN|1|2|G|1509
6GSN|1|2|G|1510

Current chains

Chain 2

18S rRNA (1798-MER)

Nearby chains

Chain T

KLLA0A07194p