IL_6GSN_080
3D structure
- PDB id
- 6GSN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in closed conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.75 Å
Loop
- Sequence
- GCCC*GUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GSN_080 not in the Motif Atlas
- Geometric match to IL_4V88_464
- Geometric discrepancy: 0.1821
- The information below is about IL_4V88_464
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65718.1
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6GSN|1|2|G|1636
6GSN|1|2|C|1637
6GSN|1|2|C|1638
6GSN|1|2|C|1639
*
6GSN|1|2|G|1758
6GSN|1|2|U|1759
6GSN|1|2|A|1760
6GSN|1|2|A|1761
6GSN|1|2|C|1762
Current chains
- Chain 2
- 18S rRNA (1798-MER)
Nearby chains
- Chain 1
- Transfer RNA; tRNA
- Chain 3
- mRNA
- Chain h
- 60S ribosomal protein L41-A
- Chain i
- Eukaryotic translation initiation factor 1A
- Chain m
- Eukaryotic translation initiation factor eIF-1
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