IL_6GSN_085
3D structure
- PDB id
- 6GSN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in closed conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.75 Å
Loop
- Sequence
- UUG*UA
- Length
- 5 nucleotides
- Bulged bases
- 6GSN|1|2|U|1655
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GSN_085 not in the Motif Atlas
- Homologous match to IL_4V88_469
- Geometric discrepancy: 0.5205
- The information below is about IL_4V88_469
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_83039.19
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 123
Unit IDs
6GSN|1|2|U|1654
6GSN|1|2|U|1655
6GSN|1|2|G|1656
*
6GSN|1|2|U|1741
6GSN|1|2|A|1742
Current chains
- Chain 2
- 18S rRNA (1798-MER)
Nearby chains
- Chain X
- RPS23
- Chain h
- 60S ribosomal protein L41-A
- Chain o
- Eukaryotic translation initiation factor 3 subunit A,eIF3a
- Chain p
- Eukaryotic translation initiation factor 3 subunit B
Coloring options: