IL_6GSN_087

3D structure

PDB id

6GSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.75 Å

Loop

Sequence

UGAG*CAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSN_087 not in the Motif Atlas

Homologous match to IL_4V88_471

Geometric discrepancy: 0.1693

The information below is about IL_4V88_471

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

6GSN|1|2|U|1667
6GSN|1|2|G|1668
6GSN|1|2|A|1669
6GSN|1|2|G|1670
*
6GSN|1|2|C|1727
6GSN|1|2|A|1728
6GSN|1|2|A|1729
6GSN|1|2|A|1730

Current chains

Chain 2

18S rRNA (1798-MER)

Nearby chains

Chain G

40S ribosomal protein S6

Chain I

40S ribosomal protein S8