IL_6GSN_088

3D structure

PDB id

6GSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.75 Å

Loop

Sequence

CUCA*UCUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSN_088 not in the Motif Atlas

Geometric match to IL_4V88_473

Geometric discrepancy: 0.141

The information below is about IL_4V88_473

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

6GSN|1|2|C|1673
6GSN|1|2|U|1674
6GSN|1|2|C|1675
6GSN|1|2|A|1676
*
6GSN|1|2|U|1721
6GSN|1|2|C|1722
6GSN|1|2|U|1723
6GSN|1|2|G|1724

Current chains

Chain 2

18S rRNA (1798-MER)

Nearby chains

Chain G

40S ribosomal protein S6

Chain I

40S ribosomal protein S8