IL_6GSN_100

3D structure

PDB id

6GSN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

5.75 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

6GSN|1|2|U|958

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSN_100 not in the Motif Atlas

Homologous match to IL_8C3A_510

Geometric discrepancy: 0.2111

The information below is about IL_8C3A_510

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

49

Unit IDs

6GSN|1|2|G|867
6GSN|1|2|A|868
6GSN|1|2|C|869
*
6GSN|1|2|G|956
6GSN|1|2|U|957
6GSN|1|2|U|958
6GSN|1|2|U|959

Current chains

Chain 2

18S rRNA (1798-MER)

Nearby chains

Chain N

KLLA0F18040p

Chain b

40S ribosomal protein S27