IL_6GSN_111
3D structure
- PDB id
- 6GSN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex in closed conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.75 Å
Loop
- Sequence
- AUAAGGAUUG*CUUGAUUU
- Length
- 18 nucleotides
- Bulged bases
- 6GSN|1|2|A|1225, 6GSN|1|2|G|1227, 6GSN|1|2|U|1256
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GSN_111 not in the Motif Atlas
- Homologous match to IL_8P9A_470
- Geometric discrepancy: 0.3464
- The information below is about IL_8P9A_470
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28304.1
- Basepair signature
- cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
6GSN|1|2|A|1223
6GSN|1|2|U|1224
6GSN|1|2|A|1225
6GSN|1|2|A|1226
6GSN|1|2|G|1227
6GSN|1|2|G|1228
6GSN|1|2|A|1229
6GSN|1|2|U|1230
6GSN|1|2|U|1231
6GSN|1|2|G|1232
*
6GSN|1|2|C|1251
6GSN|1|2|U|1252
6GSN|1|2|U|1253
6GSN|1|2|G|1254
6GSN|1|2|A|1255
6GSN|1|2|U|1256
6GSN|1|2|U|1257
6GSN|1|2|U|1258
Current chains
- Chain 2
- 18S rRNA (1798-MER)
Nearby chains
- Chain K
- KLLA0B08173p
- Chain M
- 40S ribosomal protein S12
- Chain d
- 40S ribosomal protein S29
- Chain f
- Ubiquitin-40S ribosomal protein S27a
Coloring options: