IL_6GWT_082

3D structure

PDB id

6GWT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAGG*CCGACCUUGAAAUAC

Length

20 nucleotides

Bulged bases

6GWT|1|A|C|2164, 6GWT|1|A|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GWT_082 not in the Motif Atlas

Homologous match to IL_5J7L_329

Geometric discrepancy: 0.4541

The information below is about IL_5J7L_329

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_87290.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

6GWT|1|A|G|2124
6GWT|1|A|G|2125
6GWT|1|A|A|2126
6GWT|1|A|G|2127
6GWT|1|A|G|2128
*
6GWT|1|A|C|2160
6GWT|1|A|C|2161
6GWT|1|A|G|2162
6GWT|1|A|A|2163
6GWT|1|A|C|2164
6GWT|1|A|C|2165
6GWT|1|A|U|2166
6GWT|1|A|U|2167
6GWT|1|A|G|2168
6GWT|1|A|A|2169
6GWT|1|A|A|2170
6GWT|1|A|A|2171
6GWT|1|A|U|2172
6GWT|1|A|A|2173
6GWT|1|A|C|2174

Current chains

Chain A

23S ribosomal RNA

Nearby chains