IL_6GWT_188

3D structure

PDB id

6GWT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCCUU*AAUGU

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GWT_188 not in the Motif Atlas

Geometric match to IL_8S95_002

Geometric discrepancy: 0.3138

The information below is about IL_8S95_002

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.2

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

6GWT|1|A|G|2102
6GWT|1|A|C|2103
6GWT|1|A|C|2104
6GWT|1|A|U|2105
6GWT|1|A|U|2106
*
6GWT|1|A|A|2183
6GWT|1|A|A|2184
6GWT|1|A|U|2185
6GWT|1|A|G|2186
6GWT|1|A|U|2187

Current chains

Chain A

23S ribosomal RNA

Nearby chains