IL_6GXM_067

3D structure

PDB id

6GXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

6GXM|1|A|A|1801, 6GXM|1|A|C|1816, 6GXM|1|A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GXM_067 not in the Motif Atlas

Homologous match to IL_4WF9_069

Geometric discrepancy: 0.1363

The information below is about IL_4WF9_069

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6GXM|1|A|U|1798
6GXM|1|A|G|1799
6GXM|1|A|C|1800
6GXM|1|A|A|1801
6GXM|1|A|A|1802
6GXM|1|A|A|1803
6GXM|1|A|C|1804
*
6GXM|1|A|G|1813
6GXM|1|A|G|1814
6GXM|1|A|A|1815
6GXM|1|A|C|1816
6GXM|1|A|G|1817
6GXM|1|A|U|1818
6GXM|1|A|A|1819
6GXM|1|A|U|1820
6GXM|1|A|A|1821

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA