IL_6GXM_174

3D structure

PDB id

6GXM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CACA*UGAAG

Length

9 nucleotides

Bulged bases

6GXM|1|a|A|1492, 6GXM|1|a|A|1493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GXM|1|a|C|1407
6GXM|1|a|A|1408
6GXM|1|a|C|1409
6GXM|1|a|A|1410
*
6GXM|1|a|U|1490
6GXM|1|a|G|1491
6GXM|1|a|A|1492
6GXM|1|a|A|1493
6GXM|1|a|G|1494

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain 7

mRNA

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain l

30S ribosomal protein S12

Chain v

Peptide chain release factor RF1