IL_6GXN_001
3D structure
- PDB id
- 6GXN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State III)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUGGAUG*CUGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GXN_001 not in the Motif Atlas
- Geometric match to IL_4WF9_001
- Geometric discrepancy: 0.1491
- The information below is about IL_4WF9_001
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_04021.2
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6GXN|1|A|G|24
6GXN|1|A|U|25
6GXN|1|A|G|26
6GXN|1|A|G|27
6GXN|1|A|A|28
6GXN|1|A|U|29
6GXN|1|A|G|30
*
6GXN|1|A|C|510
6GXN|1|A|U|511
6GXN|1|A|G|512
6GXN|1|A|A|513
6GXN|1|A|A|514
6GXN|1|A|A|515
6GXN|1|A|C|516
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 0
- 50S ribosomal protein L32
- Chain E
- 50S ribosomal protein L4
- Chain Q
- 50S ribosomal protein L20
- Chain S
- 50S ribosomal protein L22
Coloring options: