IL_6GXN_066

3D structure

PDB id

6GXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

6GXN|1|A|A|1801, 6GXN|1|A|C|1816, 6GXN|1|A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GXN_066 not in the Motif Atlas

Homologous match to IL_4WF9_069

Geometric discrepancy: 0.1352

The information below is about IL_4WF9_069

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6GXN|1|A|U|1798
6GXN|1|A|G|1799
6GXN|1|A|C|1800
6GXN|1|A|A|1801
6GXN|1|A|A|1802
6GXN|1|A|A|1803
6GXN|1|A|C|1804
*
6GXN|1|A|G|1813
6GXN|1|A|G|1814
6GXN|1|A|A|1815
6GXN|1|A|C|1816
6GXN|1|A|G|1817
6GXN|1|A|U|1818
6GXN|1|A|A|1819
6GXN|1|A|U|1820
6GXN|1|A|A|1821

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA