IL_6GXN_147

3D structure

PDB id

6GXN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and Pint-tRNA (State III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUGUAG*CGUAGAGAU

Length

15 nucleotides

Bulged bases

6GXN|1|a|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GXN_147 not in the Motif Atlas

Homologous match to IL_6CZR_143

Geometric discrepancy: 0.1865

The information below is about IL_6CZR_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_37722.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

2

Unit IDs

6GXN|1|a|G|683
6GXN|1|a|U|684
6GXN|1|a|G|685
6GXN|1|a|U|686
6GXN|1|a|A|687
6GXN|1|a|G|688
*
6GXN|1|a|C|699
6GXN|1|a|G|700
6GXN|1|a|U|701
6GXN|1|a|A|702
6GXN|1|a|G|703
6GXN|1|a|A|704
6GXN|1|a|G|705
6GXN|1|a|A|706
6GXN|1|a|U|707

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain k

30S ribosomal protein S11