IL_6GXO_042
3D structure
- PDB id
- 6GXO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and P/E-tRNA (State IV)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGU*AGUG
- Length
- 7 nucleotides
- Bulged bases
- 6GXO|1|A|G|1248
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GXO_042 not in the Motif Atlas
- Homologous match to IL_7A0S_041
- Geometric discrepancy: 0.1568
- The information below is about IL_7A0S_041
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_42997.5
- Basepair signature
- cWW-L-R-cWW
- Number of instances in this motif group
- 23
Unit IDs
6GXO|1|A|C|1196
6GXO|1|A|G|1197
6GXO|1|A|U|1198
*
6GXO|1|A|A|1247
6GXO|1|A|G|1248
6GXO|1|A|U|1249
6GXO|1|A|G|1250
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain E
- 50S ribosomal protein L4
- Chain L
- 50S ribosomal protein L15
- Chain Q
- 50S ribosomal protein L20
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