IL_84227.1

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3	break		4		5		6	1-6	2-5	3-4
1	IL_9D9P_001	9D9P	0.5301	0		R	Enterovirus 5' cloverleaf cis-acting replication element	C	25	C	26	A	27	*	U	19	U	20	G	21	cWW	ncWW	cWW
2	IL_5E81_401	5E81	0.4887	0	Isolated cWS basepair	3L	tRNA	C	67	G	68	A	69	*	U	4	C	5	G	6	cWW	cWS	cWW
3	IL_8B0X_105	8B0X	0.2445	1	Isolated cWS basepair (H)	a	LSU rRNA	C	1198	G	1199	U	1200	*	A	1249	U	1251	G	1252	cWW	cWS	cWW
4	IL_4WF9_044	4WF9	0.1669	1	Isolated cWS basepair	X	LSU rRNA	C	1235	G	1236	U	1237	*	A	1285	U	1287	G	1288	cWW	cWS	cWW
5	IL_9DFE_044	9DFE	0.1971	1	Isolated cWS basepair	1A	LSU rRNA	C	1196	G	1197	U	1198	*	A	1247	U	1249	G	1250	cWW	cWS	cWW
6	IL_7A0S_041	7A0S	0.1612	1	Isolated cWS basepair	X	LSU rRNA	C	1210	G	1211	U	1212	*	A	1260	U	1262	G	1263	cWW	cWS	cWW
7	IL_9E6Q_049	9E6Q	0.1093	1	Isolated cWS basepair (H)	1	LSU rRNA	C	1324	G	1325	C	1326	*	G	1374	C	1376	G	1377	cWW	cWS	cWW
8	IL_4V9F_046	4V9F	0.0757	1	Isolated cWS basepair	0	LSU rRNA	C	1301	G	1302	C	1303	*	G	1351	C	1353	G	1354	cWW	cWS	cWW
9	IL_8OI5_058	8OI5	0.0703	1		1	LSU rRNA	C	1372	G	1373	U	1374	*	A	1424	U	1426	G	1427	cWW	cWS	cWW
10	IL_9H3G_061	9H3G	0.0474	1		A	LSU rRNA	C	1386	G	1387	C	1388	*	G	1437	U	1439	G	1440	cWW	cWS	cWW
11	IL_8GLP_084	8GLP	0.0388	1	Isolated cWS basepair (H)	L5	LSU rRNA	C	2290	G	2291	C	2292	*	G	2342	U	2344	G	2345	cWW	cWS	cWW
12	IL_9PN5_056	9PN5	0.0000	1		A1	LSU rRNA	C	1376	G	1377	U	1378	*	A	1428	U	1430	G	1431	cWW	cWS	cWW
13	IL_1U6B_001	1U6B	0.2786	1	Isolated non-canonical cWW pair	B	197-MER	C	29	A	30	C	31	*	G	19	C	20	G	22	cWW	ncWW	cWW
14	IL_5ZTM_001	5ZTM	0.4041	0	Isolated non-canonical cWW pair	C	non-coding mRNA sequence roX2	U	118	A	119	G	120	*	C	162	C	163	G	164	cWW	ncWW	cWW
15	IL_9DFE_029	9DFE	0.3623	0	Isolated cWS basepair	1A	LSU rRNA	U	905	G	906	U	907	*	A	870	U	871	A	872	cWW	cWS	cWW
16	IL_9H3G_111	9H3G	0.3267	0		A	LSU rRNA	G	2647	G	2648	UY1	2649	*	A	2627	U	2628	C	2629	cWW	cWS	cWW
17	IL_7A0S_030	7A0S	0.4311	0	Isolated non-canonical cWW pair	X	LSU rRNA	U	917	A	918	U	919	*	A	883	C	884	A	885	cWW		cWW
18	IL_2ZI0_001	2ZI0	0.4435	0	Isolated near cWW basepair	C+D	RNA (21-mer)	U	9	U	10	A	11	*	U	9	U	10	A	11	cWW		cWW
19	IL_7VFT_001	7VFT	0.5256	0	Isolated non-canonical cWW contact	A	RNA (23-mer)	C	17	A	18	G	19	*	C	5\|\|\|\|12_555	A	6\|\|\|\|12_555	G	7\|\|\|\|12_555	cWW		cWW
20	IL_8GLP_043	8GLP	0.5270	2		L5	LSU rRNA	G	1213	C	1216	G	1217	*	C	1082	U	1083	C	1084	cWW	ntHS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CGU*AGUG	6
CGC*GACG	2
CGC*GGUG	2
CCA*UUG	1
CGA*UCG	1
CAC*GCCG	1
UAG*CCG	1
UGU*AUA	1
GG(UY1)*AUC	1
UAU*ACA	1
UUA*UUA	1
CAG*CAG	1
GCCCG*CUC	1

Non-Watson-Crick part of the motif

Sequence	Counts
G*GU	8
G*AC	2
A*C	2
G*U	2
C*U	1
G*C	1
A*CC	1
U*U	1
A*A	1
CCC*U	1

Release history

Release	4.10
Date	2026-05-20
Status	New id, > 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_84227.1 Version IL_84227.1 of this group appears in releases 4.10 to 4.10 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_84227.1 Version IL_84227.1 of this group appears in releases 4.10 to 4.10

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Csv

Json