IL_6GXO_099

3D structure

PDB id

6GXO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and P/E-tRNA (State IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

6GXO|1|A|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GXO_099 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.1606

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

6GXO|1|A|C|2636
6GXO|1|A|U|2637
6GXO|1|A|G|2638
6GXO|1|A|A|2639
6GXO|1|A|G|2640
*
6GXO|1|A|C|2774
6GXO|1|A|G|2775
6GXO|1|A|A|2776
6GXO|1|A|G|2777
6GXO|1|A|A|2778
6GXO|1|A|U|2779
6GXO|1|A|G|2780
6GXO|1|A|A|2781
6GXO|1|A|G|2782

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13