IL_6GXO_125

3D structure

PDB id

6GXO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP, RF1(GAQ) and P/E-tRNA (State IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6GXO|1|a|U|173

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GXO_125 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1614

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

6GXO|1|a|G|147
6GXO|1|a|G|148
6GXO|1|a|A|149
6GXO|1|a|U|150
6GXO|1|a|A|151
6GXO|1|a|A|152
6GXO|1|a|C|153
*
6GXO|1|a|G|168
6GXO|1|a|C|169
6GXO|1|a|U|170
6GXO|1|a|A|171
6GXO|1|a|A|172
6GXO|1|a|U|173
6GXO|1|a|A|174
6GXO|1|a|C|175

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20