IL_6GXP_016

3D structure

PDB id

6GXP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP(RF3-only)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6GXP|1|A|G|801, 6GXP|1|A|G|805

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GXP_016 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.1209

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6GXP|1|A|G|674
6GXP|1|A|A|675
6GXP|1|A|A|676
6GXP|1|A|A|677
6GXP|1|A|C|678
*
6GXP|1|A|G|799
6GXP|1|A|A|800
6GXP|1|A|G|801
6GXP|1|A|A|802
6GXP|1|A|U|803
6GXP|1|A|A|804
6GXP|1|A|G|805
6GXP|1|A|C|806

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15