IL_6GXP_082

3D structure

PDB id

6GXP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP(RF3-only)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GGAGG*CCGACCUUGAAAUAC

Length

20 nucleotides

Bulged bases

6GXP|1|A|C|2164, 6GXP|1|A|U|2172

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GXP_082 not in the Motif Atlas

Homologous match to IL_5J7L_329

Geometric discrepancy: 0.4536

The information below is about IL_5J7L_329

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_87290.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

6GXP|1|A|G|2124
6GXP|1|A|G|2125
6GXP|1|A|A|2126
6GXP|1|A|G|2127
6GXP|1|A|G|2128
*
6GXP|1|A|C|2160
6GXP|1|A|C|2161
6GXP|1|A|G|2162
6GXP|1|A|A|2163
6GXP|1|A|C|2164
6GXP|1|A|C|2165
6GXP|1|A|U|2166
6GXP|1|A|U|2167
6GXP|1|A|G|2168
6GXP|1|A|A|2169
6GXP|1|A|A|2170
6GXP|1|A|A|2171
6GXP|1|A|U|2172
6GXP|1|A|A|2173
6GXP|1|A|C|2174

Current chains

Chain A

23S ribosomal RNA

Nearby chains