IL_6GXP_124

3D structure

PDB id

6GXP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP(RF3-only)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6GXP|1|a|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GXP_124 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.1572

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

6GXP|1|a|G|147
6GXP|1|a|G|148
6GXP|1|a|A|149
6GXP|1|a|U|150
6GXP|1|a|A|151
6GXP|1|a|A|152
6GXP|1|a|C|153
*
6GXP|1|a|G|168
6GXP|1|a|C|169
6GXP|1|a|U|170
6GXP|1|a|A|171
6GXP|1|a|A|172
6GXP|1|a|U|173
6GXP|1|a|A|174
6GXP|1|a|C|175

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20