IL_6GXP_135

3D structure

PDB id

6GXP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP(RF3-only)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GXP_135 not in the Motif Atlas

Geometric match to IL_5J7L_023

Geometric discrepancy: 0.1343

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

6GXP|1|a|G|450
6GXP|1|a|A|451
6GXP|1|a|A|452
6GXP|1|a|G|453
6GXP|1|a|G|454
6GXP|1|a|G|455
*
6GXP|1|a|C|477
6GXP|1|a|A|478
6GXP|1|a|U|479
6GXP|1|a|U|480
6GXP|1|a|G|481
6GXP|1|a|A|482
6GXP|1|a|C|483

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain w

Peptide chain release factor RF3