IL_6GXP_148
3D structure
- PDB id
- 6GXP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP(RF3-only)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.4 Å
Loop
- Sequence
- GGGAG*UC
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GXP_148 not in the Motif Atlas
- Homologous match to IL_6CZR_144
- Geometric discrepancy: 0.2618
- The information below is about IL_6CZR_144
- Detailed Annotation
- Left turn
- Broad Annotation
- Left turn
- Motif group
- IL_29346.1
- Basepair signature
- cWW-L-cWW-L-L
- Number of instances in this motif group
- 4
Unit IDs
6GXP|1|a|G|774
6GXP|1|a|G|775
6GXP|1|a|G|776
6GXP|1|a|A|777
6GXP|1|a|G|778
*
6GXP|1|a|U|804
6GXP|1|a|C|805
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain C
- 50S ribosomal protein L2
- Chain k
- 30S ribosomal protein S11
- Chain u
- 30S ribosomal protein S21
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