IL_6GXP_168

3D structure

PDB id

6GXP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP(RF3-only)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GXP_168 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.2545

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6GXP|1|a|C|1303
6GXP|1|a|G|1304
6GXP|1|a|G|1305
6GXP|1|a|A|1306
6GXP|1|a|U|1307
6GXP|1|a|U|1308
*
6GXP|1|a|A|1329
6GXP|1|a|U|1330
6GXP|1|a|G|1331
6GXP|1|a|A|1332
6GXP|1|a|A|1333
6GXP|1|a|G|1334

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain m

30S ribosomal protein S13