IL_6GXP_186

3D structure

PDB id

6GXP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP(RF3-only)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

UGUAG*UGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GXP_186 not in the Motif Atlas

Homologous match to IL_5J7L_300

Geometric discrepancy: 0.306

The information below is about IL_5J7L_300

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_38862.4

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6GXP|1|A|U|1474
6GXP|1|A|G|1475
6GXP|1|A|U|1476
6GXP|1|A|A|1477
6GXP|1|A|G|1478
*
6GXP|1|A|U|1513
6GXP|1|A|G|1514
6GXP|1|A|A|1515
6GXP|1|A|G|1516
6GXP|1|A|G|1517

Current chains

Chain A

23S ribosomal RNA

Nearby chains