IL_6GXP_188

3D structure

PDB id

6GXP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a rotated E. coli 70S ribosome in complex with RF3-GDPCP(RF3-only)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GXP_188 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.224

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6GXP|1|A|U|1851
6GXP|1|A|U|1852
6GXP|1|A|A|1853
6GXP|1|A|A|1854
6GXP|1|A|U|1855
6GXP|1|A|U|1856
6GXP|1|A|G|1857
6GXP|1|A|A|1858
6GXP|1|A|U|1859
6GXP|1|A|G|1860
*
6GXP|1|A|U|1882
6GXP|1|A|U|1883
6GXP|1|A|G|1884
6GXP|1|A|A|1885
6GXP|1|A|U|1886
6GXP|1|A|C|1887
6GXP|1|A|G|1888
6GXP|1|A|A|1889
6GXP|1|A|A|1890
6GXP|1|A|G|1891

Current chains

Chain A

23S ribosomal RNA

Nearby chains