IL_6GZ3_034

3D structure

PDB id

6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGUC*GGA

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ3_034 not in the Motif Atlas

Geometric match to IL_5TBW_064

Geometric discrepancy: 0.3678

The information below is about IL_5TBW_064

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_15698.1

Basepair signature

cWW-tSH-cSH-cWW

Number of instances in this motif group

9

Unit IDs

6GZ3|1|A2|U|486
6GZ3|1|A2|G|487
6GZ3|1|A2|U|488
6GZ3|1|A2|C|489
*
6GZ3|1|A2|G|653
6GZ3|1|A2|G|654
6GZ3|1|A2|A|655

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AC

ribosomal protein uL4

Chain AQ

ribosomal protein eL18