IL_6GZ3_048

3D structure

PDB id

6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUGGC*GUGUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ3_048 not in the Motif Atlas

Geometric match to IL_4V88_422

Geometric discrepancy: 0.3898

The information below is about IL_4V88_422

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

6GZ3|1|A2|G|740
6GZ3|1|A2|U|741
6GZ3|1|A2|G|742
6GZ3|1|A2|G|743
6GZ3|1|A2|C|744
*
6GZ3|1|A2|G|897
6GZ3|1|A2|U|898
6GZ3|1|A2|G|899
6GZ3|1|A2|U|900
6GZ3|1|A2|U|901

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AH

ribosomal protein uL6

Chain AM

ribosomal protein eL14

Chain AS

ribosomal protein eL20