IL_6GZ3_088
3D structure
- PDB id
- 6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GACCCCAGAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 6GZ3|1|A2|C|1916, 6GZ3|1|A2|A|2022
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GZ3_088 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.1931
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6GZ3|1|A2|G|1914
6GZ3|1|A2|A|1915
6GZ3|1|A2|C|1916
6GZ3|1|A2|C|1917
6GZ3|1|A2|C|1918
6GZ3|1|A2|C|1919
6GZ3|1|A2|A|1920
6GZ3|1|A2|G|1921
6GZ3|1|A2|A|1922
6GZ3|1|A2|A|1923
6GZ3|1|A2|A|1924
6GZ3|1|A2|A|1925
*
6GZ3|1|A2|U|2019
6GZ3|1|A2|G|2020
6GZ3|1|A2|A|2021
6GZ3|1|A2|A|2022
6GZ3|1|A2|A|2023
6GZ3|1|A2|A|2024
6GZ3|1|A2|U|2025
6GZ3|1|A2|G|2026
6GZ3|1|A2|G|2027
6GZ3|1|A2|A|2028
6GZ3|1|A2|U|2029
6GZ3|1|A2|G|2030
6GZ3|1|A2|G|2031
6GZ3|1|A2|C|2032
6GZ3|1|A2|G|2033
6GZ3|1|A2|C|2034
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain A4
- 5S ribosomal RNA; 5S rRNA
- Chain AB
- ribosomal protein uL3
- Chain AF
- ribosomal protein uL30
- Chain AI
- Ribosomal protein L10 (Predicted)
- Chain AO
- ribosomal protein uL13
- Chain Af
- ribosomal protein eL33
- Chain Am
- ribosomal protein eL40
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