IL_6GZ3_091

3D structure

PDB id

6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

6GZ3|1|A2|A|1983

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ3_091 not in the Motif Atlas

Geometric match to IL_1MMS_002

Geometric discrepancy: 0.2239

The information below is about IL_1MMS_002

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

6GZ3|1|A2|G|1982
6GZ3|1|A2|A|1983
6GZ3|1|A2|G|1984
6GZ3|1|A2|U|1985
6GZ3|1|A2|G|1986
*
6GZ3|1|A2|C|1995
6GZ3|1|A2|U|1996
6GZ3|1|A2|C|1997

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AK

ribosomal protein uL10

Chain Am

ribosomal protein eL40

Chain Aq

Ribosomal protein L12