IL_6GZ3_103

3D structure

PDB id

6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAGUGG*CGC

Length

9 nucleotides

Bulged bases

6GZ3|1|A2|G|2523, 6GZ3|1|A2|U|2524, 6GZ3|1|A2|G|2525

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ3_103 not in the Motif Atlas

Geometric match to IL_3TD0_005

Geometric discrepancy: 0.2629

The information below is about IL_3TD0_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

6GZ3|1|A2|G|2521
6GZ3|1|A2|A|2522
6GZ3|1|A2|G|2523
6GZ3|1|A2|U|2524
6GZ3|1|A2|G|2525
6GZ3|1|A2|G|2526
*
6GZ3|1|A2|C|2751
6GZ3|1|A2|G|2752
6GZ3|1|A2|C|2753

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain A3

5.8S ribosomal RNA; 5.8S rRNA

Chain Ak

ribosomal protein eL38