IL_6GZ3_114

3D structure

PDB id

6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

6GZ3|1|A2|G|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ3_114 not in the Motif Atlas

Homologous match to IL_8C3A_083

Geometric discrepancy: 0.2136

The information below is about IL_8C3A_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

6GZ3|1|A2|A|2829
6GZ3|1|A2|G|2830
6GZ3|1|A2|U|2831
6GZ3|1|A2|C|2832
6GZ3|1|A2|G|2833
6GZ3|1|A2|G|2834
*
6GZ3|1|A2|C|3808
6GZ3|1|A2|U|3809
6GZ3|1|A2|G|3810
6GZ3|1|A2|U|3811

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AB

ribosomal protein uL3

Chain AV

Ribosomal protein L23