IL_6GZ3_138

3D structure

PDB id

6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAG*UCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ3_138 not in the Motif Atlas

Geometric match to IL_3NJ7_004

Geometric discrepancy: 0.3702

The information below is about IL_3NJ7_004

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

6GZ3|1|A2|G|4067
6GZ3|1|A2|A|4068
6GZ3|1|A2|G|4069
*
6GZ3|1|A2|U|4080
6GZ3|1|A2|C|4081
6GZ3|1|A2|U|4082

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AA

Ribosomal protein L8

Chain AG

ribosomal protein eL8

Chain Ag

ribosomal protein eL34

Chain BB

40S ribosomal protein S3a