IL_6GZ3_141
3D structure
- PDB id
- 6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CAG*CGUGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GZ3_141 not in the Motif Atlas
- Geometric match to IL_7RQB_082
- Geometric discrepancy: 0.2459
- The information below is about IL_7RQB_082
- Detailed Annotation
- Isolated tHS basepair with bulges
- Broad Annotation
- No text annotation
- Motif group
- IL_38958.7
- Basepair signature
- cWW-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6GZ3|1|A2|C|4205
6GZ3|1|A2|A|4206
6GZ3|1|A2|G|4207
*
6GZ3|1|A2|C|4225
6GZ3|1|A2|G|4226
6GZ3|1|A2|U|4227
6GZ3|1|A2|G|4228
6GZ3|1|A2|G|4229
Current chains
- Chain A2
- 28S ribosomal RNA
Nearby chains
- Chain A4
- 5S ribosomal RNA; 5S rRNA
- Chain AD
- ribosomal protein uL18
- Chain AJ
- Ribosomal protein L11
- Chain AT
- ribosomal protein eL21
- Chain Bv
- Transfer RNA; tRNA
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