IL_6GZ3_150

3D structure

PDB id

6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

6GZ3|1|A2|G|4484, 6GZ3|1|A2|A|4485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ3_150 not in the Motif Atlas

Geometric match to IL_5TBW_108

Geometric discrepancy: 0.1608

The information below is about IL_5TBW_108

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

6GZ3|1|A2|C|4418
6GZ3|1|A2|U|4419
6GZ3|1|A2|C|4420
*
6GZ3|1|A2|G|4482
6GZ3|1|A2|U|4483
6GZ3|1|A2|G|4484
6GZ3|1|A2|A|4485
6GZ3|1|A2|G|4486

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AB

ribosomal protein uL3

Chain AV

Ribosomal protein L23