IL_6GZ3_194

3D structure

PDB id

6GZ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA translocation by the eukaryotic 80S ribosome and the impact of GTP hydrolysis, Translocation-intermediate-POST-1 (TI-POST-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UGUG*UAGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GZ3_194 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.3128

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

6GZ3|1|B1|U|152
6GZ3|1|B1|G|153
6GZ3|1|B1|U|154
6GZ3|1|B1|G|155
*
6GZ3|1|B1|U|163
6GZ3|1|B1|A|164
6GZ3|1|B1|G|165
6GZ3|1|B1|A|166

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BG

40S ribosomal protein S6

Chain BY

ribosomal protein eS24